6BWV Immune System date Dec 15, 2017
title Crystal Structure Of The 4-1bb4-1bbl Complex
authors V.Oganesyan, R.N.Gilbreth, M.Baca
compound source
Molecule: Tumor Necrosis Factor Ligand Superfamily Member 9
Chain: A, B
Synonym: 4-1bb Ligand,4-1bbl
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfsf9
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: D, E
Synonym: 4-1bb Ligand Receptor,Cdw137,T-Cell Antigen 4-1bb Cell Antigen Ila;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf9, Cd137, Ila
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: I 21 3
R_factor 0.227 R_Free 0.265
length a length b length c angle alpha angle beta angle gamma
161.571 161.571 161.571 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand PEG enzyme
A, B

D, E

Primary referenceCrystal structure of the human 4-1BB/4-1BBL complex., Gilbreth RN, Oganesyan VY, Amdouni H, Novarra S, Grinberg L, Barnes A, Baca M, J Biol Chem. 2018 May 2. pii: RA118.002803. doi: 10.1074/jbc.RA118.002803. PMID:29720399
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (6bwv.pdb1.gz) 128 Kb
  • Biological Unit Coordinates (6bwv.pdb2.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 6BWV
  • CSU: Contacts of Structural Units for 6BWV
  • Structure Factors (1227 Kb)
  • Retrieve 6BWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BWV from S2C, [Save to disk]
  • View 6BWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BWV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bwv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bwv_D] [6bwv_B] [6bwv_E] [6bwv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BWV
  • Community annotation for 6BWV at PDBWiki (http://pdbwiki.org)

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