6BZ1 Transcription Dna date Dec 21, 2017
title Mef2 Chimera D83v Mutantdna Complex
authors X.Lei, L.Chen
compound source
Molecule: Mef2 Chimera
Chain: C, D, A, B
Synonym: Serum Response Factor-Like Protein 1,Rsrfr2,Serum Factor-Like Protein 2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mef2a, Mef2, Mef2b, Xmef2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Papapcptpaptptptpaptpapapg
Chain: G, E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Dna (5'-D(Ptptpcptptpaptpapapaptpapg 3');
Chain: H, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 32
R_factor 0.139 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.440 78.440 111.041 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.97 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe cancer mutation D83V induces an alpha-helix to beta-strand conformation switch in MEF2B., Lei X, Kou Y, Fu Y, Rajashekar N, Shi H, Wu F, Xu J, Luo Y, Chen L, J Mol Biol. 2018 Feb 22. pii: S0022-2836(18)30085-8. doi:, 10.1016/j.jmb.2018.02.012. PMID:29477338
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (6bz1.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (6bz1.pdb2.gz) 84 Kb
  • CSU: Contacts of Structural Units for 6BZ1
  • Structure Factors (687 Kb)
  • Retrieve 6BZ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BZ1 from S2C, [Save to disk]
  • View 6BZ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BZ1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bz1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bz1_D] [6bz1_B] [6bz1_H] [6bz1_C] [6bz1_F] [6bz1_E] [6bz1_G] [6bz1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BZ1
  • Community annotation for 6BZ1 at PDBWiki (http://pdbwiki.org)

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