6C1V	Dna Binding Protein Dna	date	Jan 05, 2018
title	Mbd2 In Complex With Double-Stranded Dna
authors	M.Lei, W.Tempel, C.H.Arrowsmith, C.Bountra, A.M.Edwards, J.Min, St Genomics Consortium (Sgc)
compound		source
Molecule: Methyl-Cpg-Binding Domain Protein 2 Chain: A, B, E, F Synonym: Demethylase,Dmtase,Methyl-Cpg-Binding Protein Mbd2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mbd2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-V2r-Ril Expression_system_plasmid: Pet28-Mhl
Molecule: 12-Mer Dna Chain: C, G Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: 12-Mer Dna Chain: D, H Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1	R_factor 0.233 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.013 40.198 105.158 84.50 85.48 62.71
method	X-Ray Diffraction	resolution	2.30 Å
ligand	UNX	enzyme
Gene Ontology	Chain Function Process Component F, A, E, B
Primary reference	Structural basis for the ability of MBD domains to bind methyl-CG and TG sites in DNA., Liu K, Xu C, Lei M, Yang A, Loppnau P, Hughes TR, Min J, J Biol Chem. 2018 Mar 22. pii: RA118.001785. doi: 10.1074/jbc.RA118.001785. PMID:29567833

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk] Biological Unit Coordinates (6c1v.pdb1.gz) 63 Kb Biological Unit Coordinates (6c1v.pdb2.gz) 63 Kb LPC: Ligand-Protein Contacts for 6C1V CSU: Contacts of Structural Units for 6C1V Structure Factors (2057 Kb) Retrieve 6C1V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6C1V from S2C, [Save to disk]

View 6C1V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6C1V

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6c1v_B] [6c1v_H] [6c1v_C] [6c1v_A] [6c1v_E] [6c1v_D] [6c1v_F] [6c1v_G] SWISS-PROT database: Domain organization of by SWISSPFAM

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