6CCY Transferase Inhibitor date Feb 07, 2018
title Crystal Structure Of Akt1 In Complex With A Selective Inhibi
authors Y.Wang, S.Stout
compound source
Molecule: Rac-Alpha Serinethreonine-Protein Kinase,Piftide
Chain: A
Synonym: Protein Kinase B,Pkb,Protein Kinase B Alpha,Pkb Al Oncogene C-Akt,Rac-Pk-Alpha;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akt1, Pkb, Rac
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.235 R_Free 0.276
length a length b length c angle alpha angle beta angle gamma
49.664 66.961 109.580 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.18 Å
ligand EX4, TPO enzyme Transferase E.C. BRENDA

Primary referenceDiscovery of chiral dihydropyridopyrimidinones as potent, selective and orally bioavailable inhibitors of AKT., Parthasarathy S, Henry K, Pei H, Clayton J, Rempala M, Johns D, De Frutos O, Garcia P, Mateos C, Pleite S, Wang Y, Stout S, Condon B, Ashok S, Lu Z, Ehlhardt W, Raub T, Lai M, Geeganage S, Burkholder TP, Bioorg Med Chem Lett. 2018 Apr 2. pii: S0960-894X(18)30297-X. doi:, 10.1016/j.bmcl.2018.03.092. PMID:29655979
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (6ccy.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 6CCY
  • CSU: Contacts of Structural Units for 6CCY
  • Structure Factors (254 Kb)
  • Retrieve 6CCY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CCY from S2C, [Save to disk]
  • View 6CCY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CCY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ccy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ccy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CCY
  • Community annotation for 6CCY at PDBWiki (http://pdbwiki.org)

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