6CJ5 Transferase Transferase Inhibitor date Feb 26, 2018
title Crystal Structure Of Mnk2-D228g In Complex With Inhibitor
authors Q.Han
compound source
Molecule: Map Kinase-Interacting Serinethreonine-Protein K
Chain: A
Synonym: Map Kinase Signal-Integrating Kinase 2,Mnk2
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mknk2, Gprk7, Mnk2
Expression_system: Escherichia Coli
Expression_system_taxid: 83333
Expression_system_strain: K-12
symmetry Space Group: P 32 2 1
R_factor 0.204 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.370 105.370 72.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand F4G, ZN enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based Design of Pyridone-Aminal eFT508 Targeting Dysregulated Translation by Selective Mitogen-activated Protein Kinase Interacting Kinases 1 and 2 (MNK1/2) Inhibition., Reich SH, Sprengeler PA, Chiang GG, Appleman JR, Chen J, Clarine J, Eam B, Ernst JT, Han Q, Goel VK, Han EZR, Huang V, Hung INJ, Jemison A, Jessen KA, Molter J, Murphy D, Neal M, Parker GS, Shaghafi M, Sperry S, Staunton J, Stumpf CR, Thompson PA, Tran C, Webber SE, Wegerski CJ, Zheng H, Webster KR, J Med Chem. 2018 Apr 26;61(8):3516-3540. doi: 10.1021/acs.jmedchem.7b01795. Epub , 2018 Mar 29. PMID:29526098
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (6cj5.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 6CJ5
  • CSU: Contacts of Structural Units for 6CJ5
  • Structure Factors (334 Kb)
  • Retrieve 6CJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CJ5 from S2C, [Save to disk]
  • View 6CJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CJ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6cj5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cj5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CJ5
  • Community annotation for 6CJ5 at PDBWiki (http://pdbwiki.org)

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