6CPK Protein Binding date Mar 13, 2018
title Solution Structure Of Sh3 Domain From Shank3
authors H.Ishida, H.J.Vogel
compound source
Molecule: Sh3 And Multiple Ankyrin Repeat Domains Protein 3
Chain: A
Synonym: Shank3,Proline-Rich Synapse-Associated Protein 2,P
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shank3, Kiaa1650, Prosap2, Psap2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceSolution structures of the SH3 domains from Shank scaffold proteins and their interactions with Cav1.3 calcium channels., Ishida H, Skorobogatov A, Yamniuk AP, Vogel HJ, FEBS Lett. 2018 Jul 29. doi: 10.1002/1873-3468.13209. PMID:30058071
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (383 Kb) [Save to disk]
  • Biological Unit Coordinates (6cpk.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 6CPK
  • Original NMR restraints for 6CPK from PDB
  • Retrieve 6CPK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CPK from S2C, [Save to disk]
  • View 6CPK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CPK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6cpk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cpk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CPK
  • Community annotation for 6CPK at PDBWiki (http://pdbwiki.org)

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