6DB5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceStructural Comparison of Human Anti-HIV-1 gp120 V3 MAbs of the Same Gene Usage Induced by Vaccination and Chronic Infection., Chan KW, Pan R, Costa M, Gorny MK, Wang S, Lu S, Kong XP, J Virol. 2018 Jul 11. pii: JVI.00641-18. doi: 10.1128/JVI.00641-18. PMID:29997214
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (6db5.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (6db5.pdb2.gz) 72 Kb
  • CSU: Contacts of Structural Units for 6DB5
  • Structure Factors (838 Kb)
  • Retrieve 6DB5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DB5 from S2C, [Save to disk]
    • View 6DB5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6db5_H] [6db5_I] [6db5_L] [6db5_M] [6db5_P] [6db5_Q]
  • SWISS-PROT database:

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science