6DJP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCryo-EM structure of the alphavbeta8 integrin reveals a mechanism for stabilizing integrin extension., Cormier A, Campbell MG, Ito S, Wu S, Lou J, Marks J, Baron JL, Nishimura SL, Cheng Y, Nat Struct Mol Biol. 2018 Aug;25(8):698-704. doi: 10.1038/s41594-018-0093-x. Epub, 2018 Jul 30. PMID:30061598
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (6djp.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 6DJP
  • CSU: Contacts of Structural Units for 6DJP
  • Retrieve 6DJP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DJP from S2C, [Save to disk]
  • View 6DJP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6djp_A] [6djp_B] [6djp_C] [6djp_D] [6djp_E] [6djp_F]
  • SWISS-PROT database:

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