6DLF Cell Adhesion date Jun 01, 2018
title Crystal Structure Of Ntri Homodimer
authors F.M.Ranaivoson, L.S.Turk, E.Ozkan, G.T.Montelione, D.Comoletti
compound source
Molecule: Neurotrimin
Chain: A, B
Synonym: Hnt,Iglon Family Member 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ntm, Iglon2, Nt, Unq297pro337
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.274 R_Free 0.305
length a length b length c angle alpha angle beta angle gamma
76.517 101.996 134.025 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.45 Å
ligand NAG enzyme
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (6dlf.pdb1.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 6DLF
  • CSU: Contacts of Structural Units for 6DLF
  • Structure Factors (580 Kb)
  • Retrieve 6DLF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DLF from S2C, [Save to disk]
  • View 6DLF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DLF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dlf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dlf_B] [6dlf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DLF
  • Community annotation for 6DLF at PDBWiki (http://pdbwiki.org)

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