6DLO Cytosolic Protein date Jun 02, 2018
title Crystal Structure Of Lrrk2 Wd40 Domain Dimer
authors P.Zhang, H.Ru, L.Wang, H.Wu
compound source
Molecule: Leucine-Rich Repeat Serinethreonine-Protein Kina
Chain: B, A
Fragment: Wd40 Domain Residues 2142-2527
Synonym: Dardarin
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lrrk2, Park8
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.234 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.293 103.590 112.664 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Primary referenceCrystal structure of the WD40 domain dimer of LRRK2., Zhang P, Fan Y, Ru H, Wang L, Magupalli VG, Taylor SS, Alessi DR, Wu H, Proc Natl Acad Sci U S A. 2019 Jan 29;116(5):1579-1584. doi:, 10.1073/pnas.1817889116. Epub 2019 Jan 11. PMID:30635421
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (6dlo.pdb1.gz) 204 Kb
  • CSU: Contacts of Structural Units for 6DLO
  • Structure Factors (510 Kb)
  • Retrieve 6DLO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DLO from S2C, [Save to disk]
  • View 6DLO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DLO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dlo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dlo_A] [6dlo_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DLO
  • Community annotation for 6DLO at PDBWiki (http://pdbwiki.org)

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