6DM0 Transport Protein date Jun 04, 2018
title Open State Glua2 In Complex With Stz And Blocked By Iem-1460 Micelle Signal Subtraction
authors E.C.Twomey, M.V.Yelshanskaya, A.A.Vassilevski, A.I.Sobolevsky
compound source
Molecule: Glutamate Receptor 2,Voltage-Dependent Calcium Ch Gamma-2 Subunit;
Chain: A, B, C, D
Synonym: Glur-2,Ampa-Selective Glutamate Receptor 2,Glur-B, Glutamate Receptor Ionotropic,Ampa 2,Glua2,Neuronal Voltage Calcium Channel Gamma-2 Subunit,Transmembrane Ampar Regulat Protein Gamma-2,Tarp Gamma-2;
Engineered: Yes
Organism_scientific: Rattus Norvegicus, Homo Sapiens
Organism_common: Rat, Human
Organism_taxid: 10116, 9606
Gene: Gria2, Glur2, Cacng2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
ligand CYZ, GLU, GZD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • ion channel activity
  • extracellularly glutamate-ga...
  • ligand-gated ion channel act...
  • transmitter-gated ion channe...


  • Primary referenceMechanisms of Channel Block in Calcium-Permeable AMPA Receptors., Twomey EC, Yelshanskaya MV, Vassilevski AA, Sobolevsky AI, Neuron. 2018 Aug 9. pii: S0896-6273(18)30625-1. doi:, 10.1016/j.neuron.2018.07.027. PMID:30122377
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (569 Kb) [Save to disk]
  • Biological Unit Coordinates (6dm0.pdb1.gz) 563 Kb
  • LPC: Ligand-Protein Contacts for 6DM0
  • CSU: Contacts of Structural Units for 6DM0
  • Retrieve 6DM0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6DM0 from S2C, [Save to disk]
  • View 6DM0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6DM0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6dm0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6dm0_A] [6dm0_B] [6dm0_D] [6dm0_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6DM0
  • Community annotation for 6DM0 at PDBWiki (http://pdbwiki.org)

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