OCA Atlas for 6DNA

6DNA

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

PG4, PLP

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, E, D, F, B, C

Primary reference

Biochemical Characterization and Structure-Based Mutational Analysis Provide Insight into the Binding and Mechanism of Action of Novel Aspartate Aminotransferase Inhibitors., Holt MC, Assar Z, Beheshti Zavareh R, Lin L, Anglin J, Mashadova O, Haldar D, Mullarky E, Kremer DM, Cantley LC, Kimmelman AC, Stein AJ, Lairson LL, Lyssiotis CA, Biochemistry. 2018 Nov 12. doi: 10.1021/acs.biochem.8b00914. PMID:30365304

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (379 Kb) [Save to disk]

Biological Unit Coordinates (6dna.pdb1.gz) 65 Kb

Biological Unit Coordinates (6dna.pdb2.gz) 67 Kb

Biological Unit Coordinates (6dna.pdb3.gz) 66 Kb

Biological Unit Coordinates (6dna.pdb4.gz) 67 Kb

Biological Unit Coordinates (6dna.pdb5.gz) 67 Kb

Biological Unit Coordinates (6dna.pdb6.gz) 65 Kb

LPC: Ligand-Protein Contacts for 6DNA

CSU: Contacts of Structural Units for 6DNA

Structure Factors (1912 Kb)

Retrieve 6DNA in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6DNA from S2C, [Save to disk]

View 6DNA in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dna_A] [6dna_B] [6dna_C] [6dna_D] [6dna_E] [6dna_F]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]