6DV2	Transferase Oxidoreductase	date	Jun 22, 2018
title	Crystal Structure Of Human Mitochondrial Trifunctional Prote
authors	Z.Fu, C.Xia, K.P.Battaile, J.P.Kim
compound		source
Molecule: Trifunctional Enzyme Subunit Beta, Mitochondrial Chain: A, B, C, D, E, F Fragment: Residues 34-474 Synonym: Tp-Beta Ec: 2.3.1.16 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hadhb, Mstp029 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet28 Expression_system_plasmid: Htfpb_pet28
Molecule: Trifunctional Enzyme Subunit Alpha, Mitochondrial Chain: G, H, I, J, K, L Synonym: 78 Kda Gastrin-Binding Protein,Tp-Alpha Ec: 4.2.1.17,1.1.1.211 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hadha, Hadh Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet21 Expression_system_plasmid: Htfpa_pet21
symmetry	Space Group: P 1 21 1	R_factor 0.244 R_Free 0.289
crystal cell	length a length b length c angle alpha angle beta angle gamma 136.536 237.938 141.319 90.00 105.61 90.00
method	X-Ray Diffraction	resolution	3.60 Å
ligand		enzyme	Transferase E.C.2.3.1.16 BRENDA
Gene Ontology	Chain Function Process Component F, A, E, B, C, D J, K, H, I, G, L
Primary reference	Crystal structure of human mitochondrial trifunctional protein, a fatty acid beta-oxidation metabolon., Xia C, Fu Z, Battaile KP, Kim JP, Proc Natl Acad Sci U S A. 2019 Mar 8. pii: 1816317116. doi:, 10.1073/pnas.1816317116. PMID:30850536

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1030 Kb) [Save to disk] Biological Unit Coordinates (6dv2.pdb1.gz) 352 Kb Biological Unit Coordinates (6dv2.pdb2.gz) 348 Kb Biological Unit Coordinates (6dv2.pdb3.gz) 345 Kb CSU: Contacts of Structural Units for 6DV2 Structure Factors (1056 Kb) Retrieve 6DV2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6DV2 from S2C, [Save to disk]

View 6DV2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6DV2

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6dv2_J] [6dv2_C] [6dv2_K] [6dv2_F] [6dv2_I] [6dv2_E] [6dv2_H] [6dv2_D] [6dv2_A] [6dv2_B] [6dv2_G] [6dv2_L] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6DV2

Community annotation for 6DV2 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---