6E3L Cytokine date Jul 14, 2018
title Interferon Gamma Signalling Complex With Ifngr1 And Ifngr2
authors K.M.Jude, J.L.Mendoza, K.C.Garcia
compound source
Molecule: Interferon Gamma
Chain: A, B
Synonym: Ifn-Gamma,Immune Interferon
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifng
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus

Molecule: Interferon Gamma Receptor 1
Chain: C, D
Synonym: Ifn-Gamma-R1,Cdw119,Interferon Gamma Receptor Alph Ifn-Gamma-R-Alpha;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifngr1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293

Molecule: Interferon Gamma Receptor 2
Chain: E, I
Synonym: Ifn-Gamma-R2,Interferon Gamma Receptor Accessory F Af-1,Interferon Gamma Receptor Beta-Chain,Ifn-Gamma-R-Beta, Gamma Transducer 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifngr2, Ifngt1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
symmetry Space Group: P 21 21 21
R_factor 0.248 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.694 150.212 212.668 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.80 Å
ligand BMA, CYS, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceStructure of the IFNgamma receptor complex guides design of biased agonists., Mendoza JL, Escalante NK, Jude KM, Sotolongo Bellon J, Su L, Horton TM, Tsutsumi N, Berardinelli SJ, Haltiwanger RS, Piehler J, Engleman EG, Garcia KC, Nature. 2019 Mar;567(7746):56-60. doi: 10.1038/s41586-019-0988-7. Epub 2019 Feb, 27. PMID:30814731
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (386 Kb) [Save to disk]
  • Biological Unit Coordinates (6e3l.pdb1.gz) 377 Kb
  • LPC: Ligand-Protein Contacts for 6E3L
  • CSU: Contacts of Structural Units for 6E3L
  • Structure Factors (187 Kb)
  • Retrieve 6E3L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6E3L from S2C, [Save to disk]
  • View 6E3L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6E3L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6e3l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6e3l_A] [6e3l_B] [6e3l_C] [6e3l_I] [6e3l_D] [6e3l_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6E3L
  • Community annotation for 6E3L at PDBWiki (http://pdbwiki.org)

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