6EK3 Transferase date Sep 25, 2017
title Parp15 Catalytic Domain Mutant (Y598l) In Complex With Oul35
authors M.M.Maksimainen, L.Lehtio
compound source
Molecule: Poly [Adp-Ribose] Polymerase 15
Chain: A, B
Synonym: Parp-15,Adp-Ribosyltransferase Diphtheria Toxin-Li Artd7,B-Aggressive Lymphoma Protein 3;
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parp15, Bal3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta 2
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.200 68.890 161.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand OUL enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary reference4-(Phenoxy) and 4-(benzyloxy)benzamides as potent and selective inhibitors of mono-ADP-ribosyltransferase PARP10/ARTD10., Murthy S, Desantis J, Verheugd P, Maksimainen MM, Venkannagari H, Massari S, Ashok Y, Obaji E, Nkizinkinko Y, Luscher B, Tabarrini O, Lehtio L, Eur J Med Chem. 2018 Jun 20;156:93-102. doi: 10.1016/j.ejmech.2018.06.047. PMID:30006177
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (6ek3.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 6EK3
  • CSU: Contacts of Structural Units for 6EK3
  • Structure Factors (545 Kb)
  • Retrieve 6EK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EK3 from S2C, [Save to disk]
  • View 6EK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EK3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n6ek3, region K:320-679 [Jmol] [rasmolscript] [script source]
  • Fold representative 6ek3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ek3_A] [6ek3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EK3
  • Community annotation for 6EK3 at PDBWiki (http://pdbwiki.org)

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