6FY5 Dna Binding Protein date Mar 10, 2018
title Crystal Structure Of The Macro Domain Of Human Macroh2a2
authors M.Hothorn
compound source
Molecule: Core Histone Macro-H2a.2
Chain: A, B
Synonym: Mh2a2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: H2afy2, Macroh2a2
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11
symmetry Space Group: P 1 21 1
R_factor 0.215 R_Free 0.244
length a length b length c angle alpha angle beta angle gamma
57.750 41.370 84.150 90.00 97.05 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand ACT, EDO enzyme
Primary referenceMacroH2A histone variants limit chromatin plasticity through two distinct mechanisms., Kozlowski M, Corujo D, Hothorn M, Guberovic I, Mandemaker IK, Blessing C, Sporn J, Gutierrez-Triana A, Smith R, Portmann T, Treier M, Scheffzek K, Huet S, Timinszky G, Buschbeck M, Ladurner AG, EMBO Rep. 2018 Sep 3. pii: embr.201744445. doi: 10.15252/embr.201744445. PMID:30177554
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (6fy5.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (6fy5.pdb2.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 6FY5
  • CSU: Contacts of Structural Units for 6FY5
  • Structure Factors (2004 Kb)
  • Retrieve 6FY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FY5 from S2C, [Save to disk]
  • View 6FY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FY5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6fy5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fy5_B] [6fy5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FY5
  • Community annotation for 6FY5 at PDBWiki (http://pdbwiki.org)

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