6G4W	Ribosome	date	Mar 28, 2018
title	Cryo-Em Structure Of A Late Human Pre-40s Ribosomal Subunit
authors	M.Ameismeier, J.Cheng, O.Berninghausen, R.Beckmann
compound		source
Molecule: 18s Ribosomal Rna Chain: 2		Organism_scientific: Homo Sapiens Organism_taxid: 9606
Molecule: 40s Ribosomal Protein S17 Chain: R Synonym: Small Ribosomal Subunit Protein Es17		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S27 Chain: b Synonym: Metallopan-Stimulin 1,Mps-1,Small Ribosomal Subuni Es27;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S3a Chain: B Synonym: Small Ribosomal Subunit Protein Es1,V-Fos Transfor Effector Protein,Fte-1;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S28 Chain: c Synonym: Small Ribosomal Subunit Protein Es28		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S4, X Isoform Chain: E Synonym: Scr10,Single Copy Abundant Mrna Protein,Small Ribo Subunit Protein Es4;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S30 Chain: e Synonym: Small Ribosomal Subunit Protein Es30		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S5 Chain: F Synonym: Small Ribosomal Subunit Protein Us7		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S7 Chain: H Synonym: Small Ribosomal Subunit Protein Es7		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S6 Chain: G Synonym: Phosphoprotein Np33,Small Ribosomal Subunit Protei		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S25 Chain: Z Synonym: Small Ribosomal Subunit Protein Es25		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S24 Chain: Y Synonym: Small Ribosomal Subunit Protein Es24		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: Rna-Binding Protein Pno1 Chain: x		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S23 Chain: X Synonym: Small Ribosomal Subunit Protein Us12		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: Bystin Chain: w		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S15a Chain: W Synonym: Small Ribosomal Subunit Protein Us8		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: Pre-Rrna-Processing Protein Tsr1 Homolog Chain: u		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: Unknown Chain: t		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S19 Chain: T Synonym: Small Ribosomal Subunit Protein Es19		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S18 Chain: S Synonym: Ke-3,Ke3,Small Ribosomal Subunit Protein Us13		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S16 Chain: Q Synonym: Small Ribosomal Subunit Protein Us9		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S15 Chain: P Synonym: Rig Protein,Small Ribosomal Subunit Protein Us19		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S14 Chain: O Synonym: Small Ribosomal Subunit Protein Us11		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S13 Chain: N Synonym: Small Ribosomal Subunit Protein Us15		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S11 Chain: L Synonym: Small Ribosomal Subunit Protein Us17		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S9 Chain: J Synonym: Small Ribosomal Subunit Protein Us4		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: 40s Ribosomal Protein S8 Chain: I Synonym: Small Ribosomal Subunit Protein Es8		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: Rrp12 Chain: s		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Cell_line: Hek293
Molecule: Multifunctional Methyltransferase Subunit Trm112- Protein; Chain: r Synonym: Trna Methyltransferase 112 Homolog		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: Probable 18s Rrna (Guanine-N(7))-Methyltransferas Chain: q Synonym: Bud Site Selection Protein 23 Homolog,Metastasis-R Methyltransferase 1,Williams-Beuren Syndrome Chromosomal Re Protein,Rrna Methyltransferase And Ribosome Maturation Fact Ec: 2.1.1.-		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Hek293
Molecule: Unknown Helix Chain: k		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Cell_line: Hek293
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	4.50 Å
ligand		enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component B cytosolic small ribosomal su... E ribosome cytosolic small ribosomal su... F cytosolic small ribosomal su... G cytosolic small ribosomal su... H cytosolic small ribosomal su... I cytosolic small ribosomal su... J cytosolic small ribosomal su... L cytosolic small ribosomal su... N cytosolic small ribosomal su... O translation regulator activi... cytosolic small ribosomal su... P cytosolic small ribosomal su... Q cytosolic small ribosomal su... R cytosolic small ribosomal su... S small ribosomal subunit cytosolic small ribosomal su... T cytosolic small ribosomal su... W cytosolic small ribosomal su... X cytosolic small ribosomal su... Y small ribosomal subunit cytosolic small ribosomal su... Z small ribosomal subunit cytosolic small ribosomal su... b cytosolic small ribosomal su... c small ribosomal subunit cytosolic small ribosomal su... e small ribosomal subunit cytosolic small ribosomal su... q r u w x
Primary reference	Visualizing late states of human 40S ribosomal subunit maturation., Ameismeier M, Cheng J, Berninghausen O, Beckmann R, Nature. 2018 Jun 6. pii: 10.1038/s41586-018-0193-0. doi:, 10.1038/s41586-018-0193-0. PMID:29875412

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (863 Kb) [Save to disk] Biological Unit Coordinates (6g4w.pdb1.gz) 814 Kb CSU: Contacts of Structural Units for 6G4W Retrieve 6G4W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6G4W from S2C, [Save to disk]

View 6G4W in 3D

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Visual 3D analysis of 6G4W

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6g4w_c] [6g4w_T] [6g4w_b] [6g4w_H] [6g4w_w] [6g4w_s] [6g4w_L] [6g4w_r] [6g4w_E] [6g4w_W] [6g4w_F] [6g4w_R] [6g4w_B] [6g4w_Y] [6g4w_P] [6g4w_Z] [6g4w_u] [6g4w_t] [6g4w_S] [6g4w_e] [6g4w_q] [6g4w_x] [6g4w_X] [6g4w_2] [6g4w_N] [6g4w_O] [6g4w_I] [6g4w_k] [6g4w_Q] [6g4w_J] [6g4w_G] SWISS-PROT database: Domain organization of by SWISSPFAM

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