6GBE Protein Binding date Apr 13, 2018
title Murine Protein Tyrosine Phosphatase Ptpn13 Pdz3 Domain-Prk2 Complex
authors G.Kock, R.Stoll
compound source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 13
Chain: A
Synonym: Ptp36,Protein Tyrosine Phosphatase Dpzptp,Protein Phosphatase Ptp-Bl,Protein-Tyrosine Phosphatase Rip;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ptpn13, Ptp14
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Serinethreonine-Protein Kinase N2
Chain: B
Synonym: Pkn Gamma,Protein Kinase C-Like 2,Protein-Kinase C Kinase 2;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
enzyme Hydrolase E.C. BRENDA
Primary referenceMolecular Basis of Class III Ligand Recognition by PDZ3 in Murine Protein Tyrosine Phosphatase PTPN13., Kock G, Dicks M, Yip KT, Kohl B, Putz S, Heumann R, Erdmann KS, Stoll R, J Mol Biol. 2018 Oct 19;430(21):4275-4292. doi: 10.1016/j.jmb.2018.08.023. Epub, 2018 Sep 3. PMID:30189200
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (677 Kb) [Save to disk]
  • Biological Unit Coordinates (6gbe.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 6GBE
  • Original NMR restraints for 6GBE from PDB
  • Retrieve 6GBE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6GBE from S2C, [Save to disk]
  • View 6GBE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6GBE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6gbe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6gbe_A] [6gbe_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6GBE
  • Community annotation for 6GBE at PDBWiki (http://pdbwiki.org)

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