6H00 Oxidoreductase date Jul 05, 2018
title Crystal Structure Of Human Pyridoxine 5-Phophate Oxidase, R1 Variant
authors S.Mackinnon, M.P.Wilson, L.Shrestha, G.A.Bezerra, J.Newman, N.Fox F.Sorrell, C.H.Arrowsmith, A.Edwards, C.Bountra, P.T.Clayton, P. W.W.Yue
compound source
Molecule: Pyridoxine-5'-Phosphate Oxidase
Chain: A
Synonym: Pyridoxamine-Phosphate Oxidase
Ec: 1.4.3.5
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pnpo
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.169 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.330 83.330 58.930 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.66 Å
ligand EDO, FMN, SO4 enzyme Oxidoreductase E.C.1.4.3.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (6h00.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 6H00
  • CSU: Contacts of Structural Units for 6H00
  • Structure Factors (1152 Kb)
  • Retrieve 6H00 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H00 from S2C, [Save to disk]
  • View 6H00 in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 6H00
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6h00 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h00_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6H00
  • Community annotation for 6H00 at PDBWiki (http://pdbwiki.org)

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