6H0B Transferase date Jul 08, 2018
title Crystal Structure Of The Human Galnac-T4 In Complex With Udp Manganese And The Diglycopeptide 6.
authors M.De Las Rivas, E.J.P.Daniel, H.Coelho, E.Lira-Navarrete, L.Raic I.Companon, A.Diniz, L.Lagartera, J.Jimenez-Barbero, H.Clausen, F.Marcelo, F.Corzana, T.A.Gerken, R.Hurtado-Guerrero
compound source
Molecule: Polypeptide N-Acetylgalactosaminyltransferase 4
Chain: A, B
Synonym: Polypeptide Galnac Transferase 4,Pp-Gantase 4,Prot
Acetylgalactosaminyltransferase 4,Udp-Galnac: Polypeptide N- Acetylgalactosaminyltransferase 4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Galnt4
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Ala-Thr-Gly-Ala-Gly-Ala-Gly-Ala-Gly-Thr-Thr-Pro-G Gly;
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.190 R_Free 0.238
length a length b length c angle alpha angle beta angle gamma
66.090 81.332 84.863 65.55 68.66 74.31
method X-Ray Diffractionresolution 1.80 Å
ligand EDO, GOL, MN, NGA, UDP enzyme Transferase E.C. BRENDA
A, B

Primary referenceStructural and Mechanistic Insights into the Catalytic-Domain-Mediated Short-Range Glycosylation Preferences of GalNAc-T4., de Las Rivas M, Paul Daniel EJ, Coelho H, Lira-Navarrete E, Raich L, Companon I, Diniz A, Lagartera L, Jimenez-Barbero J, Clausen H, Rovira C, Marcelo F, Corzana F, Gerken TA, Hurtado-Guerrero R, ACS Cent Sci. 2018 Sep 26;4(9):1274-1290. doi: 10.1021/acscentsci.8b00488. Epub, 2018 Sep 14. PMID:30276263
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (6h0b.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (6h0b.pdb2.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 6H0B
  • CSU: Contacts of Structural Units for 6H0B
  • Structure Factors (5361 Kb)
  • Retrieve 6H0B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H0B from S2C, [Save to disk]
  • View 6H0B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6H0B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6h0b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h0b_B] [6h0b_A] [6h0b_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6H0B
  • Community annotation for 6H0B at PDBWiki (http://pdbwiki.org)

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