6ICV Protein Binding date Sep 07, 2018
title Structure Of Setd3 Bound To Sah And Unmodified Actin
authors Q.Guo, S.Liao, C.Xu, Structural Genomics Consortium (Sgc)
compound source
Molecule: Histone-Lysine N-Methyltransferase Setd3
Chain: A, B
Synonym: Set Domain-Containing Protein 3
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Setd3, C14orf154
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032

Molecule: Actin, Cytoplasmic 1
Chain: C, D
Synonym: Beta-Actin
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Actb
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032
symmetry Space Group: P 1 21 1
R_factor 0.168 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.186 175.170 66.499 90.00 92.57 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand SAH enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insights into SETD3-mediated histidine methylation on beta-actin., Guo Q, Liao S, Kwiatkowski S, Tomaka W, Yu H, Wu G, Tu X, Min J, Drozak J, Xu C, Elife. 2019 Feb 20;8. pii: 43676. doi: 10.7554/eLife.43676. PMID:30785395
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk]
  • Biological Unit Coordinates (6icv.pdb1.gz) 170 Kb
  • Biological Unit Coordinates (6icv.pdb2.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 6ICV
  • CSU: Contacts of Structural Units for 6ICV
  • Structure Factors (1902 Kb)
  • Retrieve 6ICV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ICV from S2C, [Save to disk]
  • View 6ICV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ICV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6icv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6icv_B] [6icv_A] [6icv_D] [6icv_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ICV
  • Community annotation for 6ICV at PDBWiki (http://pdbwiki.org)

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