6K5R Protein Binding Transcription date May 30, 2019
title Complex Of Sumo2 With Phosphorylated Viral Sim Ie2
authors K.S.Chatterjee, R.Das
compound source
Molecule: Small Ubiquitin-Related Modifier 3
Chain: A
Synonym: Small Ubiquitin Like Modifier 2, Sumo-3,Smt3 Homol 2,Ubiquitin-Like Protein Smt3a,Smt3a;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sumo3, Smt3a, Smt3h1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Asp-Thr-Ala-Gly-Cys-Ile-Val-Ile-Sep-Asp-Sep-Glu
Chain: B
Synonym: Viral Transcription Factor Ie2, Ie2,Protein Ul122
Engineered: Yes

Synthetic: Yes
Organism_scientific: Human Cytomegalovirus (Strain Ad169)
Organism_common: Hhv-5
Organism_taxid: 10360
methodSolution NMR
ligand SEP enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (468 Kb) [Save to disk]
  • Biological Unit Coordinates (6k5r.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 6K5R
  • CSU: Contacts of Structural Units for 6K5R
  • Original NMR restraints for 6K5R from PDB
  • Retrieve 6K5R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6K5R from S2C, [Save to disk]
  • View 6K5R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6K5R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6k5r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6k5r_A] [6k5r_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6K5R
  • Community annotation for 6K5R at PDBWiki (http://pdbwiki.org)

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