6K7O Immune System date Jun 08, 2019
title Complex Structure Of Lilrb4 And H128-3 Antibody
authors H.Song, Y.Chai, X.Xu, F.G.Gao
compound source
Molecule: Leukocyte Immunoglobulin-Like Receptor Subfamily 4;
Chain: A, P, R, Q
Synonym: Lilrb4,Cd85 Antigen-Like Family Member K,Immunoglo Transcript 3,Ilt-3,Leukocyte Immunoglobulin-Like Receptor 5 Monocyte Inhibitory Receptor Hm18;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lilrb4, Ilt3, Lir5
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: H128-3 Fab Heavy Chain
Chain: B, D, F, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f

Molecule: H128-3 Fab Light Chain
Chain: C, E, G, L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f
symmetry Space Group: P 62
R_factor 0.228 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
187.276 187.276 183.819 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (341 Kb) [Save to disk]
  • Biological Unit Coordinates (6k7o.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (6k7o.pdb2.gz) 89 Kb
  • Biological Unit Coordinates (6k7o.pdb3.gz) 89 Kb
  • Biological Unit Coordinates (6k7o.pdb4.gz) 89 Kb
  • CSU: Contacts of Structural Units for 6K7O
  • Structure Factors (1040 Kb)
  • Retrieve 6K7O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6K7O from S2C, [Save to disk]
  • View 6K7O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6K7O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6k7o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6k7o_F] [6k7o_H] [6k7o_D] [6k7o_C] [6k7o_Q] [6k7o_L] [6k7o_B] [6k7o_G] [6k7o_A] [6k7o_E] [6k7o_P] [6k7o_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6K7O
  • Community annotation for 6K7O at PDBWiki (http://pdbwiki.org)

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