6KC4 Transferase Signaling Protein date Jun 27, 2019
title Crystal Structure Of Human Fer Sh2 Domain Bound To A Phospho (Depyenvd)
authors Y.Matsuura
compound source
Molecule: Tyrosine-Protein Kinase Fer
Chain: A, C, E, G, I, K
Synonym: Feline Encephalitis Virus-Related Kinase Fer,Fujin Poultry Sarcomafeline Sarcoma-Related Protein Fer,Proto-On Fer,Tyrosine Kinase 3,P94-Fer;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fer, Tyk3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Phosphopeptide (Edpyenvd)
Chain: B, D, F, H, J, L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.165 R_Free 0.186
length a length b length c angle alpha angle beta angle gamma
34.700 186.661 50.580 90.00 96.96 90.00
method X-Ray Diffractionresolution 1.37 Å
ligand PTR enzyme Transferase E.C. BRENDA
A, C, K, I, G, E

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (6kc4.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (6kc4.pdb2.gz) 41 Kb
  • Biological Unit Coordinates (6kc4.pdb3.gz) 39 Kb
  • Biological Unit Coordinates (6kc4.pdb4.gz) 41 Kb
  • Biological Unit Coordinates (6kc4.pdb5.gz) 41 Kb
  • Biological Unit Coordinates (6kc4.pdb6.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 6KC4
  • CSU: Contacts of Structural Units for 6KC4
  • Structure Factors (5785 Kb)
  • Retrieve 6KC4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6KC4 from S2C, [Save to disk]
  • View 6KC4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6KC4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6kc4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6kc4_D] [6kc4_K] [6kc4_J] [6kc4_A] [6kc4_H] [6kc4_I] [6kc4_E] [6kc4_F] [6kc4_B] [6kc4_C] [6kc4_G] [6kc4_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6KC4
  • Community annotation for 6KC4 at PDBWiki (http://pdbwiki.org)

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