6KHM	Hydrolase	date	Jul 16, 2019
title	Lipase (Open Form)
authors	H.J.Kim, A.R.Kwon
compound		source
Molecule: Hydrolase, Alphabeta Domain Protein Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, X, Y, W, Z; Engineered: Yes		Organism_scientific: Cutibacterium Acnes Hl110pa4 Organism_taxid: 765080 Gene: Hmpref9578_02569 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 31	R_factor 0.185 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 185.857 185.857 205.099 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	DK6, DK9, DKF, DKL, DKO	enzyme
Gene Ontology	Chain Function Process Component S, F, T, N, K, Y, E, V, Z, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1254 Kb) [Save to disk] Biological Unit Coordinates (6khm.pdb1.gz) 108 Kb Biological Unit Coordinates (6khm.pdb2.gz) 108 Kb Biological Unit Coordinates (6khm.pdb3.gz) 108 Kb Biological Unit Coordinates (6khm.pdb4.gz) 109 Kb Biological Unit Coordinates (6khm.pdb5.gz) 108 Kb Biological Unit Coordinates (6khm.pdb6.gz) 109 Kb Biological Unit Coordinates (6khm.pdb7.gz) 107 Kb Biological Unit Coordinates (6khm.pdb8.gz) 107 Kb Biological Unit Coordinates (6khm.pdb9.gz) 108 Kb LPC: Ligand-Protein Contacts for 6KHM CSU: Contacts of Structural Units for 6KHM Structure Factors (9583 Kb) Retrieve 6KHM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6KHM from S2C, [Save to disk]

View 6KHM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6KHM

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6khm_W] [6khm_P] [6khm_Q] [6khm_X] [6khm_L] [6khm_H] [6khm_C] [6khm_K] [6khm_T] [6khm_F] [6khm_V] [6khm_R] [6khm_I] [6khm_Y] [6khm_A] [6khm_M] [6khm_Z] [6khm_D] [6khm_N] [6khm_S] [6khm_E] [6khm_G] [6khm_U] [6khm_O] [6khm_J] [6khm_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6KHM

Community annotation for 6KHM at PDBWiki (http://pdbwiki.org)

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