6L6L Dna Binding Protein date Oct 29, 2019
title Structural Basis Of Nr4a2 Homodimers Binding To Selective Nu Responsive Elements
authors L.Jiang, Y.Chen
compound source
Molecule: Nuclear Receptor Related 1
Chain: A, B
Synonym: Nuclear Receptor Subfamily 4 Group A Member 2 Isof
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr4a2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Apapapgpgptpcpapapapcptpgptpgpapcpcptp 3');
Chain: C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Ptpaptpapgpgptpcpapcpapgptptptpgpapcpc 3');
Chain: D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.405 64.315 60.776 90.00 96.84 90.00
method X-Ray Diffractionresolution 2.78 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (6l6l.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 6L6L
  • CSU: Contacts of Structural Units for 6L6L
  • Structure Factors (192 Kb)
  • Retrieve 6L6L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6L6L from S2C, [Save to disk]
  • View 6L6L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6L6L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6l6l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6l6l_B] [6l6l_D] [6l6l_A] [6l6l_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6L6L
  • Community annotation for 6L6L at PDBWiki (http://pdbwiki.org)

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