6L93 Transport Protein date Nov 08, 2019
title X-Ray Structure Of The Ligand-Free Human Trpv1 Ankyrin Repea
authors M.Tanaka, K.Hayakawa, M.Unno
compound source
Molecule: Transient Receptor Potential Cation Channel Subfa Member 1;
Chain: A, B, C, D, E, F
Synonym: Trpv1,Capsaicin Receptor,Osm-9-Like Trp Channel 1, Vanilloid Receptor 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trpv1, Vr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.220 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
184.228 167.414 112.632 90.00 108.38 90.00
method X-Ray Diffractionresolution 4.47 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk]
  • Biological Unit Coordinates (6l93.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (6l93.pdb2.gz) 42 Kb
  • Biological Unit Coordinates (6l93.pdb3.gz) 43 Kb
  • Biological Unit Coordinates (6l93.pdb4.gz) 42 Kb
  • Biological Unit Coordinates (6l93.pdb5.gz) 42 Kb
  • Biological Unit Coordinates (6l93.pdb6.gz) 43 Kb
  • CSU: Contacts of Structural Units for 6L93
  • Structure Factors (714 Kb)
  • Retrieve 6L93 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6L93 from S2C, [Save to disk]
  • View 6L93 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6L93
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6l93 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6l93_A] [6l93_F] [6l93_B] [6l93_D] [6l93_E] [6l93_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6L93
  • Community annotation for 6L93 at PDBWiki (http://pdbwiki.org)

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