6MGP Immune System date Sep 14, 2018
title Structure Of Human 4-1bb 4-1bbl Complex
authors C.R.Kimberlin, S.M.Chin, Z.Roe-Zurz, A.Xu, Y.Yang
compound source
Molecule: Tumor Necrosis Factor Ligand Superfamily Member 9
Chain: A, B, C
Synonym: 4-1bb Ligand,4-1bbl
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfsf9
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: Highfive
Expression_system_vector_type: Bacmid
Expression_system_plasmid: Pfastbac

Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: X, Y, Z
Synonym: 4-1bb Ligand Receptor,Cdw137,T-Cell Antigen 4-1bb Cell Antigen Ila;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf9, Cd137, Ila
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_cell_line: Highfive
Expression_system_vector_type: Bacmid
Expression_system_plasmid: Pfastbac
symmetry Space Group: C 2 2 21
R_factor 0.217 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.013 229.378 114.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.13 Å
ligand ACT, FUC, GOL, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Z, X, Y


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk]
  • Biological Unit Coordinates (6mgp.pdb1.gz) 277 Kb
  • LPC: Ligand-Protein Contacts for 6MGP
  • CSU: Contacts of Structural Units for 6MGP
  • Structure Factors (1336 Kb)
  • Retrieve 6MGP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MGP from S2C, [Save to disk]
  • View 6MGP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MGP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6mgp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mgp_B] [6mgp_A] [6mgp_X] [6mgp_Z] [6mgp_Y] [6mgp_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MGP
  • Community annotation for 6MGP at PDBWiki (http://pdbwiki.org)

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