6MJL Transcription Peptide date Sep 21, 2018
title Crystal Structure Of Chrebp Nls Peptide Bound To Importin Al
authors H.Jung, K.Uyeda
compound source
Molecule: Importin Subunit Alpha-1
Chain: B
Synonym: Importin Alpha P1,Karyopherin Subunit Alpha-2,Pend Targeting Complex 58 Kda Subunit,Ptac58,Rag Cohort Protein Alpha;
Engineered: Yes
Other_details: Importin Alpha Delta Ibb
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Kpna2, Rch1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Chrebp Peptide Asn-Tyr-Trp-Lys-Arg-Arg-Ile-Glu-Va
Chain: A
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.434 89.691 96.332 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
Primary referenceThe structure of importin alpha and the nuclear localization peptide of ChREBP, and small compound inhibitors of ChREBP-importin alpha interactions., Jung H, Takeshima T, Nakagawa T, MacMillan KS, Wynn RM, Wang H, Sakiyama H, Wei S, Li Y, Bruick RK, Posner BA, De Brabander JK, Uyeda K, Biochem J. 2020 Sep 18;477(17):3253-3269. doi: 10.1042/BCJ20200520. PMID:32776146
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (6mjl.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 6MJL
  • Structure Factors (582 Kb)
  • Retrieve 6MJL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MJL from S2C, [Save to disk]
  • View 6MJL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MJL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6mjl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mjl_A] [6mjl_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MJL
  • Community annotation for 6MJL at PDBWiki (http://pdbwiki.org)

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