6MVL Immune System date Oct 26, 2018
title Crystal Structure Of Vista Bound To A Ph-Selective Antibody Fragment
authors D.A.Critton
compound source
Molecule: V-Type Immunoglobulin Domain-Containing Suppresso Cell Activation;
Chain: A
Synonym: Platelet Receptor Gi24,Stress-Induced Secreted Pro Sisp-1,V-Set Domain-Containing Immunoregulatory Receptor,V- Immunoregulatory Receptor;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vsir, C10orf54, Sisp1, Vista, Pp2135, Unq730pro1412
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Antibody Fab Fragment Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606

Molecule: Antibody Fab Fragment Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
symmetry Space Group: I 21 21 21
R_factor 0.182 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.166 125.856 192.040 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.61 Å
ligand NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (6mvl.pdb1.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 6MVL
  • CSU: Contacts of Structural Units for 6MVL
  • Structure Factors (1878 Kb)
  • Retrieve 6MVL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6MVL from S2C, [Save to disk]
  • View 6MVL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6MVL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6mvl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6mvl_H] [6mvl_L] [6mvl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6MVL
  • Community annotation for 6MVL at PDBWiki (http://pdbwiki.org)

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