6N0M Signaling Protein date Nov 07, 2018
title Crystal Structure Of Sestrin2 In Complex With Nv-0005138
authors D.O'Neill
compound source
Molecule: Sestrin-2
Chain: A, B, C, D, E
Synonym: Hypoxia-Induced Gene
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sesn2, Hi95, Sest2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: I 2 3
R_factor 0.184 R_Free 0.250
length a length b length c angle alpha angle beta angle gamma
290.410 290.410 290.410 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand K94 enzyme Oxidoreductase E.C. BRENDA
A, D, C, E, B

Primary referenceDiscovery of NV-5138, the first selective Brain mTORC1 activator., Sengupta S, Giaime E, Narayan S, Hahm S, Howell J, O'Neill D, Vlasuk GP, Saiah E, Sci Rep. 2019 Mar 11;9(1):4107. doi: 10.1038/s41598-019-40693-5. PMID:30858438
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (308 Kb) [Save to disk]
  • Biological Unit Coordinates (6n0m.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (6n0m.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (6n0m.pdb3.gz) 63 Kb
  • Biological Unit Coordinates (6n0m.pdb4.gz) 63 Kb
  • Biological Unit Coordinates (6n0m.pdb5.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 6N0M
  • CSU: Contacts of Structural Units for 6N0M
  • Structure Factors (1858 Kb)
  • Retrieve 6N0M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6N0M from S2C, [Save to disk]
  • View 6N0M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6N0M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6n0m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6n0m_A] [6n0m_B] [6n0m_E] [6n0m_C] [6n0m_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6N0M
  • Community annotation for 6N0M at PDBWiki (http://pdbwiki.org)

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