6NCA	Immune System	date	Dec 11, 2018
title	Hla-A2 (A02:01) Bound To A Peptide From The Epstein-Barr Vi Protein
authors	L.J.Stern, L.K.Selin, I.Y.Song
compound		source
Molecule: Replication And Transcription Activator Chain: Y, u, z, y, 8, w, 4, 3, W, 6, x, 5, X, v, 2, U, Z, V Synonym: Rta,Immediate-Early Protein Rta Engineered: Yes		Synthetic: Yes Organism_scientific: Epstein-Barr Virus Organism_common: Hhv-4 Organism_taxid: 10376
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha Chain: A, B, C, D, E, F, G, H, S, J, K, L, M, N, O, P, Q, R Synonym: Mhc Class I Antigen A2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-A, Hlaa Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768
Molecule: Beta-2-Microglobulin Chain: a, b, c, d, f, g, h, s, j, k, l, m, n, o, p, q, r, I Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m, Cdabp0092, Hdcma22p Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768
symmetry	Space Group: P 1 21 1	R_factor 0.285 R_Free 0.303
crystal cell	length a length b length c angle alpha angle beta angle gamma 189.910 100.170 292.410 90.00 94.43 90.00
method	X-Ray Diffraction	resolution	3.30 Å
Gene Ontology	Chain Function Process Component r, a, d, j, k, h, g, f, t, i, e, n, m, s, l, c, p, q, b, o cellular response to iron io...

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1291 Kb) [Save to disk] Biological Unit Coordinates (6nca.pdb1.gz) 79 Kb Biological Unit Coordinates (6nca.pdb2.gz) 79 Kb Biological Unit Coordinates (6nca.pdb3.gz) 79 Kb Biological Unit Coordinates (6nca.pdb4.gz) 79 Kb Biological Unit Coordinates (6nca.pdb5.gz) 78 Kb Biological Unit Coordinates (6nca.pdb6.gz) 79 Kb Biological Unit Coordinates (6nca.pdb7.gz) 79 Kb Biological Unit Coordinates (6nca.pdb8.gz) 79 Kb Biological Unit Coordinates (6nca.pdb9.gz) 79 Kb CSU: Contacts of Structural Units for 6NCA Structure Factors (6573 Kb) Retrieve 6NCA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6NCA from S2C, [Save to disk]

View 6NCA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6NCA

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6nca_D] [6nca_4] [6nca_2] [6nca_y] [6nca_1] [6nca_I] [6nca_e] [6nca_q] [6nca_b] [6nca_K] [6nca_s] [6nca_f] [6nca_B] [6nca_Z] [6nca_N] [6nca_Q] [6nca_m] [6nca_O] [6nca_g] [6nca_l] [6nca_X] [6nca_S] [6nca_r] [6nca_L] [6nca_G] [6nca_U] [6nca_u] [6nca_7] [6nca_a] [6nca_z] [6nca_t] [6nca_Y] [6nca_C] [6nca_R] [6nca_W] [6nca_A] [6nca_8] [6nca_n] [6nca_F] [6nca_c] [6nca_x] [6nca_J] [6nca_p] [6nca_o] [6nca_5] [6nca_j] [6nca_6] [6nca_T] [6nca_v] [6nca_H] [6nca_h] [6nca_d] [6nca_w] [6nca_k] [6nca_E] [6nca_V] [6nca_i] [6nca_3] [6nca_P] [6nca_M] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 6NCA at PDBWiki (http://pdbwiki.org)

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