6NEF Protein Fibril date Dec 17, 2018
title Outer Membrane Cytochrome S Filament From Geobacter Sulfurre
authors D.J.Filman, S.F.Marino, J.E.Ward, L.Yang, Z.Mester, E.Bullitt, D.R M.Strauss
compound source
Molecule: C-Type Cytochrome Omcs
Chain: A
Synonym: Outer Membrane Cytochrome S
Other_details: Six-Heme Multiheme C-Type Cytochrome, Protei
Organism_scientific: Geobacter Sulfurreducens (Strain Atcc Dsm 12127 Pca);
Organism_taxid: 243231
Strain: Atcc 51573 Dsm 12127 Pca
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.42 Å
ligand HEC, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (6nef.pdb1.gz) 604 Kb
  • LPC: Ligand-Protein Contacts for 6NEF
  • CSU: Contacts of Structural Units for 6NEF
  • Retrieve 6NEF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NEF from S2C, [Save to disk]
  • View 6NEF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NEF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6nef from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nef_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NEF
  • Community annotation for 6NEF at PDBWiki (http://pdbwiki.org)

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