6NOH Rna Binding Protein Rna date Jan 16, 2019
title Crystal Structure Of Fbf-2 Repeat 5 Mutant (C363s, R364y, Q3 Complex With 8-Nt Rna
authors K.L.Mccann, Y.Wang, C.Qiu, T.M.T.Hall
compound source
Molecule: Fem-3 Mrna-Binding Factor 2
Chain: A
Synonym: Fbf-2
Engineered: Yes
Mutation: Yes
Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Fbf-2, F21h12.5
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (5'-R(Upgpupapapapupa)-3')
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
symmetry Space Group: P 61
R_factor 0.159 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.397 96.397 99.853 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.25 Å
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEngineering a conserved RNA regulatory protein repurposes its biological function in vivo., Bhat VD, McCann KL, Wang Y, Fonseca DR, Shukla T, Alexander JC, Qiu C, Wickens M, Lo TW, Tanaka Hall TM, Campbell ZT, Elife. 2019 Jan 17;8. pii: 43788. doi: 10.7554/eLife.43788. PMID:30652968
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (6noh.pdb1.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 6NOH
  • CSU: Contacts of Structural Units for 6NOH
  • Structure Factors (191 Kb)
  • Retrieve 6NOH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NOH from S2C, [Save to disk]
  • View 6NOH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NOH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6noh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6noh_A] [6noh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NOH
  • Community annotation for 6NOH at PDBWiki (http://pdbwiki.org)

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