6NZD Signaling Protein Inhibitor date Feb 13, 2019
title Cryo-Em Structure Of The Lysosomal Folliculin Complex (Flcn- Raga-Ragc-Ragulator)
authors S.A.Fromm, L.N.Young, J.H.Hurley
compound source
Molecule: Ragulator Complex Protein Lamtor1
Chain: A
Synonym: Late Endosomallysosomal Adaptor And Mapk And Mtor 1,Lipid Raft Adaptor Protein P18,Protein Associated With Dr Endosomes,P27kip1-Releasing Factor From Rhoa,P27rf-Rho;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamtor1, C11orf59, Pdro, Pp7157
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Ragulator Complex Protein Lamtor2
Chain: B
Synonym: Endosomal Adaptor Protein P14,Late Endosomallysos Interacting Protein,Late Endosomallysosomal Adaptor And Ma Mtor Activator 2,Mitogen-Activated Protein-Binding Protein- Interacting Protein,Mapbp-Interacting Protein,Roadblock Dom Containing Protein 3;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamtor2, Mapbpip, Robld3, Hspc003
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Ragulator Complex Protein Lamtor3
Chain: C
Synonym: Late Endosomallysosomal Adaptor And Mapk And Mtor 3,Mek-Binding Partner 1,Mp1,Mitogen-Activated Protein Kinas 1-Interacting Protein 1,Mitogen-Activated Protein Kinase Sc Protein 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamtor3, Map2k1ip1, Mapksp1, Pro2783
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Ragulator Complex Protein Lamtor4
Chain: D
Synonym: Late Endosomallysosomal Adaptor And Mapk And Mtor 4;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamtor4, C7orf59
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Hepatitis B Virus X Interacting Protein
Chain: E
Synonym: Ragulator Complex Protein Lamtor5
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamtor5, Hbxip, Hcg_40252
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Ras-Related Gtp-Binding Protein A
Chain: F
Synonym: Raga,Adenovirus E3 14.7 Kda-Interacting Protein 1,
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rraga
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Ras-Related Gtp-Binding Protein C
Chain: G
Synonym: Ragc,Gtpase-Interacting Protein 2,Tib929
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rragc
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Folliculin
Chain: H
Synonym: Bhd Skin Lesion Fibrofolliculoma Protein,Birt-Hogg Syndrome Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Flcn, Bhd
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293 Gnti

Molecule: Folliculin-Interacting Protein 2
Chain: I
Synonym: Fnip1-Like Protein,O6-Methylguanine-Induced Apopto Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fnip2, Fnipl, Kiaa1450, Mapo1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293 Gnti
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
ligand GDP, L8S enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


H


I
  • ATPase inhibitor activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (6nzd.pdb1.gz) 250 Kb
  • LPC: Ligand-Protein Contacts for 6NZD
  • CSU: Contacts of Structural Units for 6NZD
  • Retrieve 6NZD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6NZD from S2C, [Save to disk]
  • View 6NZD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6NZD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6nzd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6nzd_D] [6nzd_G] [6nzd_E] [6nzd_H] [6nzd_I] [6nzd_F] [6nzd_A] [6nzd_B] [6nzd_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6NZD
  • Community annotation for 6NZD at PDBWiki (http://pdbwiki.org)

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