6OD3	Transcription Dna	date	Mar 25, 2019
title	Human Tcf4 C-Terminal Bhlh Domain In Complex With 13-Bp Oligonucleotide Containing E-Box Sequence
authors	J.R.Horton, X.Cheng, J.Yang
compound		source
Molecule: Transcription Factor 4 Chain: A, B, E, F, G, H, I, J Fragment: C-Terminal Bhlh Domain (Unp Residues 405-464) Synonym: Tcf-4, Class B Basic Helix-Loop-Helix Protein 19, Immunoglobulin Transcription Factor 2, Itf-2, Sl3-3 Enhance 2, Sef-2; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tcf4, Bhlhb19, Itf2, Sef2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21-Codon Plus(De3)-Ril
Molecule: Dna (5'-D(Cpaptpapcpapcpgptpgptpapt) Chain: X, W, Y, Z Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1	R_factor 0.221 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.180 58.946 62.720 104.63 90.34 94.86
method	X-Ray Diffraction	resolution	1.49 Å
ligand	CL, EDO, PG4	enzyme
Gene Ontology	Chain Function Process Component H, F, A, J, I, G, E, B
Primary reference	Structural basis for preferential binding of human TCF4 to DNA containing 5-carboxylcytosine., Yang J, Horton JR, Li J, Huang Y, Zhang X, Blumenthal RM, Cheng X, Nucleic Acids Res. 2019 May 13. pii: 5488531. doi: 10.1093/nar/gkz381. PMID:31081034

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk] Biological Unit Coordinates (6od3.pdb1.gz) 66 Kb Biological Unit Coordinates (6od3.pdb2.gz) 65 Kb Biological Unit Coordinates (6od3.pdb3.gz) 39 Kb Biological Unit Coordinates (6od3.pdb4.gz) 37 Kb LPC: Ligand-Protein Contacts for 6OD3 CSU: Contacts of Structural Units for 6OD3 Structure Factors (2580 Kb) Retrieve 6OD3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6OD3 from S2C, [Save to disk]

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Structure-derived information

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Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6od3_J] [6od3_I] [6od3_G] [6od3_X] [6od3_E] [6od3_A] [6od3_B] [6od3_Z] [6od3_Y] [6od3_H] [6od3_W] [6od3_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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