6OIL Signaling Protein date Apr 09, 2019
title Crystal Structure Of Human Vista Extracellular Domain
authors N.Mehta, J.R.Cochran, I.I.Mathews
compound source
Molecule: V-Type Immunoglobulin Domain-Containing Suppresso Cell Activation;
Chain: A
Synonym: Platelet Receptor Gi24,Stress-Induced Secreted Pro Sisp-1,V-Set Domain-Containing Immunoregulatory Receptor,V- Immunoregulatory Receptor;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vsir
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_strain: Expi293 System
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.223
length a length b length c angle alpha angle beta angle gamma
29.169 64.089 37.695 90.00 91.73 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand NAG enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (6oil.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 6OIL
  • CSU: Contacts of Structural Units for 6OIL
  • Structure Factors (302 Kb)
  • Retrieve 6OIL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OIL from S2C, [Save to disk]
  • View 6OIL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OIL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6oil from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6oil_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OIL
  • Community annotation for 6OIL at PDBWiki (http://pdbwiki.org)

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