6OON Hydrolase Rna date Apr 23, 2019
title Human Argonaute4 Bound To Guide Rna
authors M.S.Park, J.A.Brackbill, K.Nakanishi
compound source
Molecule: Protein Argonaute-4
Chain: A
Synonym: Hago4,Argonaute Risc Catalytic Component 4,Eukaryo Translation Initiation Factor 2c 4,Eif2c 4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ago4, Eif2c4, Kiaa1567
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Rna (5'-R(Papapapapapapapapapapupu)-3
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783
symmetry Space Group: C 1 2 1
R_factor 0.171 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
213.980 68.011 83.270 90.00 102.68 90.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (291 Kb) [Save to disk]
  • Biological Unit Coordinates (6oon.pdb1.gz) 278 Kb
  • CSU: Contacts of Structural Units for 6OON
  • Structure Factors (1999 Kb)
  • Retrieve 6OON in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6OON from S2C, [Save to disk]
  • View 6OON in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6OON
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6oon from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6oon_B] [6oon_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6OON
  • Community annotation for 6OON at PDBWiki (http://pdbwiki.org)

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