6PBG Protein Transport date Jun 13, 2019
title Crystal Structure Of Wd-Repeat Domain Of Human Coatomer Subu (Copa)
authors L.Halabelian, H.Zeng, A.Dong, P.Loppnau, A.Seitova, A.Hutchinson, C.Bountra, A.M.Edwards, C.H.Arrowsmith, Structural Genomics Co (Sgc)
compound source
Molecule: Coatomer Subunit Alpha
Chain: A
Synonym: Alpha-Coat Protein,Alpha-Cop,Hep-Cop,Hepcop
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Copa
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pfboh-Mhl
symmetry Space Group: P 1 21 1
R_factor 0.171 R_Free 0.218
length a length b length c angle alpha angle beta angle gamma
34.633 85.452 47.913 90.00 107.04 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand TLA, UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (6pbg.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 6PBG
  • CSU: Contacts of Structural Units for 6PBG
  • Structure Factors (1116 Kb)
  • Retrieve 6PBG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PBG from S2C, [Save to disk]
  • View 6PBG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6PBG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6pbg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6pbg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6PBG
  • Community annotation for 6PBG at PDBWiki (http://pdbwiki.org)

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