6PYX Protein Transport date Jul 31, 2019
title Calcium Activated Chloride Channel Regulator 1 (Clca1) Vwa D
authors T.J.Brett, K.B.Berry
compound source
Molecule: Cdna Flj56608, Highly Similar To Homo Sapiens Chl Channel, Calcium Activated, Family Member 1 (Clca1), Mrna;
Chain: A, B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293f
Expression_system_organ: Kidney
Expression_system_tissue: Embryonic Kidney
Expression_system_cell: Epithelial
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec
symmetry Space Group: C 1 2 1
R_factor 0.218 R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.383 74.452 75.386 90.00 109.37 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (6pyx.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (6pyx.pdb2.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 6PYX
  • CSU: Contacts of Structural Units for 6PYX
  • Structure Factors (725 Kb)
  • Retrieve 6PYX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6PYX from S2C, [Save to disk]
  • View 6PYX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6PYX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6pyx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6pyx_B] [6pyx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6PYX
  • Community annotation for 6PYX at PDBWiki (http://pdbwiki.org)

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