6RIR Signaling Protein date Apr 25, 2019
title Crystal Structure Of Phosphorylated Rab8a In Complex With Th Binding Domain Of Rilpl2
authors D.Waschbusch, E.Purlyte, D.R.Alessi, A.R.Khan
compound source
Molecule: Ras-Related Protein Rab-8a
Chain: A, B
Synonym: Oncogene C-Mel
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab8a, Mel, Rab8
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rilp-Like Protein 2
Chain: D, C
Synonym: Rab-Interacting Lysosomal Protein-Like 2,P40phox-B Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rilpl2, Rlp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free 0.211
length a length b length c angle alpha angle beta angle gamma
60.333 71.509 114.784 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.77 Å
ligand GOL, GTP, MG, TPO enzyme
A, B

D, C

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (6rir.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 6RIR
  • CSU: Contacts of Structural Units for 6RIR
  • Structure Factors (1945 Kb)
  • Retrieve 6RIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RIR from S2C, [Save to disk]
  • View 6RIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6RIR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6rir from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6rir_A] [6rir_D] [6rir_C] [6rir_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6RIR
  • Community annotation for 6RIR at PDBWiki (http://pdbwiki.org)

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