6RO1 Rna Binding Protein date May 10, 2019
title X-Ray Crystal Structure Of The Mtr4 Nvl Complex
authors M.Lingaraju, L.M.Langer, J.Basquin, S.Falk, E.Conti
compound source
Molecule: Exosome Rna Helicase Mtr4
Chain: A
Synonym: Atp-Dependent Rna Helicase Dob1,Atp-Dependent Rna Skiv2l2,Superkiller Viralicidic Activity 2-Like 2,Tramp-Lik Helicase;
Ec: 3.6.4.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mtrex, Dob1, Kiaa0052, Mtr4, Skiv2l2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Pet

Molecule: Nuclear Valosin-Containing Protein-Like
Chain: B
Synonym: Nuclear Vcp-Like Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nvl, Nvl2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Pet
symmetry Space Group: P 61
R_factor 0.223 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
184.365 184.365 90.528 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.07 Å
ligand ADP, CL, SO4 enzyme Hydrolase E.C.3.6.4.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A

  • catalytic step 2 spliceosome...
  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (453 Kb) [Save to disk]
  • Biological Unit Coordinates (6ro1.pdb1.gz) 445 Kb
  • LPC: Ligand-Protein Contacts for 6RO1
  • CSU: Contacts of Structural Units for 6RO1
  • Structure Factors (900 Kb)
  • Retrieve 6RO1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RO1 from S2C, [Save to disk]
  • View 6RO1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6RO1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ro1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ro1_A] [6ro1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6RO1
  • Community annotation for 6RO1 at PDBWiki (http://pdbwiki.org)

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