6RY4 Protein Binding date Jun 10, 2019
title Parp15 Catalytic Domain In Complex With 4-(3-Carbamoylphenox Benzamide.
authors S.N.Murthy, M.M.Maksimainen, L.Lehtio
compound source
Molecule: Protein Mono-Adp-Ribosyltransferase Parp15
Chain: A, B
Synonym: Adp-Ribosyltransferase Diphtheria Toxin-Like 7,Art Aggressive Lymphoma Protein 3,Poly [Adp-Ribose] Polymerase 15;
Ec: 2.4.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parp15, Bal3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.219
length a length b length c angle alpha angle beta angle gamma
45.480 68.970 161.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand DMS, KMW enzyme Transferase E.C.2.4.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (6ry4.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (6ry4.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 6RY4
  • CSU: Contacts of Structural Units for 6RY4
  • Structure Factors (303 Kb)
  • Retrieve 6RY4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6RY4 from S2C, [Save to disk]
  • View 6RY4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6RY4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ry4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ry4_A] [6ry4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6RY4
  • Community annotation for 6RY4 at PDBWiki (http://pdbwiki.org)

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