6SB2 Signaling Protein date Jul 18, 2019
title Cryo-Em Structure Of Mtorc1 Bound To Active Ragac Gtpases
authors M.Anandapadamanaban, A.Berndt, G.R.Masson, O.Perisic, R.L.Willia
compound source
Molecule: Mtor,Serinethreonine-Protein Kinase Mtor,Mtor, Serinethreonine-Protein Kinase Mtor;
Chain: A, B
Synonym: Fk506-Binding Protein 12-Rapamycin Complex-Associa Protein 1,Fkbp12-Rapamycin Complex-Associated Protein,Mamma Target Of Rapamycin,Mtor,Mechanistic Target Of Rapamycin,Ra And Fkbp12 Target 1,Rapamycin Target Protein 1,Fk506-Bindin 12-Rapamycin Complex-Associated Protein 1,Fkbp12-Rapamycin Associated Protein,Mammalian Target Of Rapamycin,Mtor,Mecha Target Of Rapamycin,Rapamycin And Fkbp12 Target 1,Rapamycin Protein 1;
Ec: 2.7.11.1,2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mtor, Frap, Frap1, Frap2, Raft1, Rapt1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Target Of Rapamycin Complex Subunit Lst8
Chain: E, H
Synonym: Torc Subunit Lst8,G Protein Beta Subunit-Like,Prot Gbetal,Mammalian Lethal With Sec13 Protein 8,Mlst8;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mlst8, Gbl, Lst8
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Ras-Related Gtp-Binding Protein A
Chain: C, I
Synonym: Raga,Adenovirus E3 14.7 Kda-Interacting Protein 1,
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rraga
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ras-Related Gtp-Binding Protein C
Chain: D, J
Synonym: Ragc,Gtpase-Interacting Protein 2,Tib929
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rragc
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Regulatory-Associated Protein Of Mtor
Chain: Y, N
Synonym: Raptor,P150 Target Of Rapamycin (Tor)-Scaffold Pro
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rptor, Kiaa1303, Raptor
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 6.20 Å
ligand GDP, GTP enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


C, I


E, H
  • protein serine/threonine kin...


  • J, D


    N, Y
  • protein serine/threonine kin...
  • protein kinase activator act...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (846 Kb) [Save to disk]
  • Biological Unit Coordinates (6sb2.pdb1.gz) 790 Kb
  • LPC: Ligand-Protein Contacts for 6SB2
  • CSU: Contacts of Structural Units for 6SB2
  • Retrieve 6SB2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SB2 from S2C, [Save to disk]
  • View 6SB2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6SB2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b6sb2, region B:1-78 [Jmol] [rasmolscript] [script source]
        - Domain d1t6sb2, region B:86-162 [Jmol] [rasmolscript] [script source]
  • Fold representative 6sb2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6sb2_C] [6sb2_E] [6sb2_Y] [6sb2_H] [6sb2_J] [6sb2_D] [6sb2_B] [6sb2_N] [6sb2_I] [6sb2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6SB2
  • Community annotation for 6SB2 at PDBWiki (http://pdbwiki.org)

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