6SQ2 Signaling Protein date Sep 03, 2019
title Structure Of A Phosphomimetic Switch 2 Variant Of Rab8a In C With The Phospho-Rab Binding Domain Of Rilpl2
authors A.R.Khan, D.Waschbusch
compound source
Molecule: Ras-Related Protein Rab-8a
Chain: A, B
Synonym: Oncogene C-Mel
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab8a, Mel, Rab8
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rilp-Like Protein 2
Chain: D, E
Synonym: Rab-Interacting Lysosomal Protein-Like 2,P40phox-B Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rilpl2, Rlp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.698 71.733 116.390 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand GTP, MG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (6sq2.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 6SQ2
  • CSU: Contacts of Structural Units for 6SQ2
  • Structure Factors (2331 Kb)
  • Retrieve 6SQ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6SQ2 from S2C, [Save to disk]
  • View 6SQ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6SQ2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6sq2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6sq2_A] [6sq2_D] [6sq2_E] [6sq2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6SQ2
  • Community annotation for 6SQ2 at PDBWiki (http://pdbwiki.org)

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