6U62 Signaling Protein date Aug 29, 2019
title Raptor-Rag-Ragulator Complex
authors K.B.Rogala, D.M.Sabatini
compound source
Molecule: Regulatory-Associated Protein Of Mtor
Chain: A
Synonym: Raptor,P150 Target Of Rapamycin (Tor)-Scaffold Pro
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rptor, Kiaa1303, Raptor
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293

Molecule: Ras-Related Gtp-Binding Protein A
Chain: B
Synonym: Raga,Adenovirus E3 14.7 Kda-Interacting Protein 1,
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rraga
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Lobstr(De3)

Molecule: Ras-Related Gtp-Binding Protein C
Chain: C
Synonym: Ragc,Gtpase-Interacting Protein 2,Tib929
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rragc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Lobstr(De3)

Molecule: Ragulator Complex Protein Lamtor1
Chain: D
Synonym: Late Endosomallysosomal Adaptor And Mapk And Mtor 1,Lipid Raft Adaptor Protein P18,Protein Associated With Dr Endosomes,P27kip1-Releasing Factor From Rhoa,P27rf-Rho;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamtor1, C11orf59, Pdro, Pp7157
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Lobstr(De3)

Molecule: Ragulator Complex Protein Lamtor2
Chain: E
Synonym: Endosomal Adaptor Protein P14,Late Endosomallysos Interacting Protein,Late Endosomallysosomal Adaptor And Ma Mtor Activator 2,Mitogen-Activated Protein-Binding Protein- Interacting Protein,Mapbp-Interacting Protein,Roadblock Dom Containing Protein 3;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamtor2, Mapbpip, Robld3, Hspc003
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Lobstr(De3)

Molecule: Ragulator Complex Protein Lamtor3
Chain: F
Synonym: Late Endosomallysosomal Adaptor And Mapk And Mtor 3,Mek-Binding Partner 1,Mp1,Mitogen-Activated Protein Kinas 1-Interacting Protein 1,Mitogen-Activated Protein Kinase Sc Protein 1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamtor3, Map2k1ip1, Mapksp1, Pro2783
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Lobstr(De3)

Molecule: Ragulator Complex Protein Lamtor4
Chain: G
Synonym: Late Endosomallysosomal Adaptor And Mapk And Mtor 4;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamtor4, C7orf59
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Lobstr(De3)

Molecule: Ragulator Complex Protein Lamtor5
Chain: H
Synonym: Hepatitis B Virus X-Interacting Protein,Hbx-Intera Protein,Late Endosomallysosomal Adaptor And Mapk And Mtor 5;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamtor5, Hbxip, Xip
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Lobstr(De3)
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.18 Å
ligand GDP, GTP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein serine/threonine kin...
  • protein kinase activator act...


  • B


    C


    D


    E


    F


    G


    H


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk]
  • Biological Unit Coordinates (6u62.pdb1.gz) 309 Kb
  • LPC: Ligand-Protein Contacts for 6U62
  • CSU: Contacts of Structural Units for 6U62
  • Retrieve 6U62 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U62 from S2C, [Save to disk]
  • View 6U62 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6U62
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6u62 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u62_D] [6u62_B] [6u62_A] [6u62_G] [6u62_H] [6u62_F] [6u62_E] [6u62_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6U62
  • Community annotation for 6U62 at PDBWiki (http://pdbwiki.org)

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