6U6V Immune System date Aug 30, 2019
title Crystal Structure Of Human Pd-1h Vista
authors B.T.Slater, X.Han, L.Chen, Y.Xiong
compound source
Molecule: V-Type Immunoglobulin Domain-Containing Suppresso Cell Activation;
Chain: A
Synonym: Platelet Receptor Gi24,Stress-Induced Secreted Pro Sisp-1,V-Set Domain-Containing Immunoregulatory Receptor,V- Immunoregulatory Receptor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vsir, C10orf54, Sisp1, Vista, Pp2135, Unq730pro1412
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293
Expression_system_plasmid: Pcdna3.4
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.821 55.833 42.271 90.00 97.69 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (6u6v.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 6U6V
  • CSU: Contacts of Structural Units for 6U6V
  • Structure Factors (373 Kb)
  • Retrieve 6U6V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6U6V from S2C, [Save to disk]
  • View 6U6V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6U6V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6u6v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6u6v_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6U6V
  • Community annotation for 6U6V at PDBWiki (http://pdbwiki.org)

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