6VVQ Lipid Binding Protein date Feb 18, 2020
title Human Start Domain Of Acyl-Coenzyme A Thioesterase 11 (Acot1 To Myristic Acid
authors M.C.Tillman, E.A.Ortlund
compound source
Molecule: Acyl-Coenzyme A Thioesterase 11
Chain: A, B, C, D
Synonym: Acyl-Coa Thioesterase 11,Acyl-Coa Thioester Hydrol Adipose-Associated Thioesterase,Brown Fat-Inducible Thioest Bfit,Palmitoyl-Coenzyme A Thioesterase;
Ec: 3.1.2.-,3.1.2.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Variant: Isoform 2
Gene: Acot11, Bfit, Kiaa0707, Thea
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.082 70.984 127.224 90.00 96.13 90.00
method X-Ray Diffractionresolution 3.09 Å
ligand MYR enzyme Hydrolase E.C.3.1.2 BRENDA
Primary referenceAllosteric regulation of thioesterase superfamily member 1 by lipid sensor domain binding fatty acids and lysophosphatidylcholine., Tillman MC, Imai N, Li Y, Khadka M, Okafor CD, Juneja P, Adhiyaman A, Hagen SJ, Cohen DE, Ortlund EA, Proc Natl Acad Sci U S A. 2020 Aug 20. pii: 2003877117. doi:, 10.1073/pnas.2003877117. PMID:32820071
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk]
  • Biological Unit Coordinates (6vvq.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (6vvq.pdb2.gz) 74 Kb
  • Biological Unit Coordinates (6vvq.pdb3.gz) 76 Kb
  • Biological Unit Coordinates (6vvq.pdb4.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 6VVQ
  • CSU: Contacts of Structural Units for 6VVQ
  • Structure Factors (558 Kb)
  • Retrieve 6VVQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6VVQ from S2C, [Save to disk]
  • View 6VVQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6VVQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6vvq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6vvq_C] [6vvq_A] [6vvq_D] [6vvq_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6VVQ
  • Community annotation for 6VVQ at PDBWiki (http://pdbwiki.org)

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