6WG6 Cell Cycle Dna date Apr 04, 2020
title Crystal Structure Of Human Smc1-Smc3 Hinge Domain Heterodime North-Open Conformation
authors Z.B.Shi, H.Yu
compound source
Molecule: Structural Maintenance Of Chromosomes Protein
Chain: A, C, E, G, I, K
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smc1a
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Structural Maintenance Of Chromosomes Protein 3
Chain: B, D, F, H, J, L
Synonym: Smc-3,Basement Membrane-Associated Chondroitin Pro Bamacan,Chondroitin Sulfate Proteoglycan 6,Chromosome-Assoc Polypeptide,Hcap;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smc3, Bam, Bmh, Cspg6, Smc3l1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Poly(Dt)
Chain: M, N
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.252 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.985 145.021 315.949 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.54 Å
Gene
Ontology
ChainFunctionProcessComponent
A, K, E, C, I, G


F, J, B, H, D, L


Primary referenceCryo-EM structure of the human cohesin-NIPBL-DNA complex., Shi Z, Gao H, Bai XC, Yu H, Science. 2020 May 14. pii: science.abb0981. doi: 10.1126/science.abb0981. PMID:32409525
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (878 Kb) [Save to disk]
  • Biological Unit Coordinates (6wg6.pdb1.gz) 434 Kb
  • Biological Unit Coordinates (6wg6.pdb2.gz) 432 Kb
  • CSU: Contacts of Structural Units for 6WG6
  • Structure Factors (339 Kb)
  • Retrieve 6WG6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WG6 from S2C, [Save to disk]
  • View 6WG6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6WG6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6wg6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wg6_G] [6wg6_E] [6wg6_N] [6wg6_F] [6wg6_H] [6wg6_A] [6wg6_D] [6wg6_I] [6wg6_L] [6wg6_C] [6wg6_B] [6wg6_J] [6wg6_K] [6wg6_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6WG6
  • Community annotation for 6WG6 at PDBWiki (http://pdbwiki.org)

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