6WGI Replication Dna date Apr 05, 2020
title Atomic Model Of The Mutant Occm (Orc-Cdc6-Cdt1-Mcm2-7 With M Truncation) Loaded On Dna At 10.5 A Resolution
authors Z.Yuan, S.Schneider, T.Dodd, A.Riera, L.Bai, C.Yan, I.Magdalou, I.I B.Stillman, H.Li, C.Speck
compound source
Molecule: Dna (34-Mer)
Chain: G
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna (34-Mer)
Chain: H
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Cell Division Control Protein 6
Chain: 9
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Cdc6, Yjl194w, J0347
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 1
Chain: A
Synonym: Origin Recognition Complex 120 Kda Subunit
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Orc1, Yml065w
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 2
Chain: B
Synonym: Origin Recognition Complex 71 Kda Subunit
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Orc2, Rrr1, Sir5, Ybr060c, Ybr0523
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 3
Chain: C
Synonym: Origin Recognition Complex 62 Kda Subunit
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Orc3, Oaf1, Oif1, Yll004w, L1365
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 5
Chain: E
Synonym: Origin Recognition Complex 53 Kda Subunit
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Orc5, Ynl261w, N0834
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 4
Chain: D
Synonym: Origin Recognition Complex 56 Kda Subunit
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Orc4, Ypr162c, P9325.5
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 6
Chain: F
Synonym: Acs-Associated Protein 1,Origin Recognition Comple Subunit;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Orc6, Aap1, Yhr118c
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm2
Chain: 2
Synonym: Minichromosome Maintenance Protein 2
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm2, Ybl023c, Ybl0438
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm3
Chain: 3
Synonym: Minichromosome Maintenance Protein 3
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm3, Yel032w, Sygp-Orf23
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm4
Chain: 4
Synonym: Cell Division Control Protein 54
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm4, Cdc54, Hcd21, Ypr019w, Yp9531.13
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Minichromosome Maintenance Protein 5
Chain: 5
Synonym: Cell Division Control Protein 46
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm5, Cdc46, Ylr274w, L9328.1
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Cell Division Cycle Protein Cdt1
Chain: L
Synonym: Sic1 Indispensable Protein 2,Topoisomerase-A Hyper Protein 11;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Tah11, Cdt1, Sid2, Yjr046w, J1641
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm6
Chain: 6
Synonym: Minichromosome Maintenance Protein 6
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm6, Ygl201c
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932

Molecule: Dna Replication Licensing Factor Mcm7
Chain: 7
Synonym: Cell Division Control Protein 47, Minichromosome M Protein 7;
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Mcm7, Cdc47, Ybr202w, Ybr1441
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 10.00 Å
ligand AGS, MG enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
2


3
  • chromatin silencing at telom...

  • 4


    5


    6


    7
  • chromatin silencing at telom...

  • 9


    A


    B
  • chromatin silencing at telom...

  • C


    D


    E


    F


    L


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (993 Kb) [Save to disk]
  • Biological Unit Coordinates (6wgi.pdb1.gz) 967 Kb
  • LPC: Ligand-Protein Contacts for 6WGI
  • CSU: Contacts of Structural Units for 6WGI
  • Retrieve 6WGI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6WGI from S2C, [Save to disk]
  • View 6WGI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6WGI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6wgi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6wgi_A] [6wgi_L] [6wgi_H] [6wgi_9] [6wgi_3] [6wgi_C] [6wgi_D] [6wgi_5] [6wgi_7] [6wgi_G] [6wgi_2] [6wgi_B] [6wgi_F] [6wgi_4] [6wgi_6] [6wgi_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6WGI
  • Community annotation for 6WGI at PDBWiki (http://pdbwiki.org)

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